Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tldDTldD protein. (473 aa)    
Predicted Functional Partners:
EIO_2810
PmbA.
 
 
0.908
ctaC
Cytochrome c oxidase, subunit II.
       0.670
EIO_0768
Protoheme IX farnesyltransferase.
       0.578
ctaG
Cytochrome C oxidase assembly protein.
       0.578
EIO_0770
Conserved hypothetical protein.
       0.552
EIO_0772
Cytochrome c oxidase, subunit III.
       0.532
EIO_0247
Peptidyl-dipeptidase, putative.
  
   
 0.503
EIO_0774
L-threonine synthase.
  
    0.401
dprA
DNA processing protein DprA, putative.
       0.400
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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