Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
surf-1SURF1 protein. (225 aa)    
Predicted Functional Partners:
ctaG
Cytochrome C oxidase assembly protein.
 
 0.984
EIO_1697
Cytochrome oxidase assembly protein.
 
 0.982
EIO_0775
Peptidase, M16 family protein.
   
 
 0.927
EIO_0768
Protoheme IX farnesyltransferase.
 
 
 0.923
EIO_0772
Cytochrome c oxidase, subunit III.
 
 
 0.894
ctaC
Cytochrome c oxidase, subunit II.
 
 0.873
EIO_0774
L-threonine synthase.
 
     0.873
EIO_0776
Acetyltransferase, gnat family.
       0.854
EIO_2830
Ubiquinol--cytochrome c reductase, cytochrome c1.
  
 
 
 0.828
cyoE
Protoheme IX farnesyltransferase.
 
 
 0.819
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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