Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EIO_0776Acetyltransferase, gnat family. (196 aa)    
Predicted Functional Partners:
EIO_0775
Peptidase, M16 family protein.
  
    0.857
surf-1
SURF1 protein.
       0.854
EIO_0774
L-threonine synthase.
       0.854
EIO_0777
FAD linked oxidase, C-terminal domain protein.
       0.774
EIO_0772
Cytochrome c oxidase, subunit III.
       0.701
EIO_0768
Protoheme IX farnesyltransferase.
       0.671
EIO_0770
Conserved hypothetical protein.
       0.671
ctaG
Cytochrome C oxidase assembly protein.
       0.671
EIO_2312
Acetyltransferase.
  
     0.667
EIO_2039
Conserved hypothetical protein.
  
     0.574
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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