Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0781Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein. (520 aa)    
Predicted Functional Partners:
EIO_0782
Peptide ABC transporter permease.
 
   0.898
EIO_0783
Peptide ABC transporter permease.
 
  0.885
EIO_2560
Glutamate/glutamine/aspartate/asparagine transport system permeaseprotein BztC.
   
 
  0.817
EIO_1678
Putative permease, YjgP/YjgQ family.
     
  0.816
EIO_1679
Putative permease.
     
  0.816
EIO_2561
ABC glutamate/glutamine/aspartate/asparagine transporter, inner membrane subunit BztB.
   
 
  0.816
EIO_2688
ABC transporter, ATP-binding protein.
     
  0.816
EIO_2079
ABC transporter, substrate binding protein (sugar).
  
  
  0.799
EIO_0554
ABC transporter, permease protein.
     
  0.796
yejA
Oligopeptide/dipeptide uptake family ABC transporter, periplasmic substrate-binding protein.
  
 
  0.785
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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