Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EIO_0785Oligopeptide ABC transporter ATP-binding protein. (293 aa)    
Predicted Functional Partners:
EIO_0783
Peptide ABC transporter permease.
  0.950
EIO_0271
Peptide/opine/nickel uptake ABC transporter family, ATP-binding protein.
 
 
0.932
EIO_0902
Nickel import ATP-binding protein NikD, putative.
  
 
0.931
EIO_2306
ABC transporter, membrane spanning protein (dipeptide).
 
  0.929
EIO_2674
Oligopeptide ABC transporter (permease).
 
  0.912
EIO_1449
Peptide ABC transporter permease protein.
 
  0.902
EIO_1502
Peptide ABC transporter, permease protein.
 
  0.901
EIO_0782
Peptide ABC transporter permease.
 
  0.882
EIO_0278
Putative peptide ABC transporter, permease protein.
 
  0.879
EIO_0784
Oligopeptide ABC transporter ATP-binding protein.
 
 
 
0.873
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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