Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EIO_0790threonyl-tRNA synthetase. (648 aa)    
Predicted Functional Partners:
EIO_1401
Translation initiation factor 3.
  
 0.958
EIO_0206
50S ribosomal protein L20.
 
 
 0.895
leuS
leucyl-tRNA synthetase.
 
 
 0.884
pheT
phenylalanyl-tRNA synthetase, beta subunit.
  
 
 0.882
metG
methionyl-tRNA synthetase.
 
 
 0.869
rpsD
Ribosomal protein S4.
   
 0.843
valS
valyl-tRNA synthetase.
 
 
 0.834
EIO_1716
Ribosomal RNA large subunit methyltransferase J.
 
  0.829
ksgA
Dimethyladenosine transferase.
     
 0.827
rpsA
30S ribosomal protein S1.
  
 
 0.808
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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