Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0797Membrane protein, putative. (180 aa)    
Predicted Functional Partners:
mreC
Rod shape-determining protein MreC.
 
     0.875
EIO_2163
Conserved hypothetical protein.
  
     0.770
EIO_0904
D-alanyl-D-alanine carboxypeptidase family.
  
     0.769
EIO_0575
Conserved hypothetical protein.
  
     0.764
EIO_0854
Rhomboid family protein.
  
     0.760
EIO_0572
Lipoprotein, putative.
  
     0.758
EIO_1079
Conserved hypothetical protein.
  
     0.756
EIO_1563
Outer membrane chaperone Skp.
  
     0.745
EIO_1478
Conserved hypothetical protein.
  
     0.741
EIO_0990
Conserved hypothetical protein.
  
     0.729
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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