Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mreCRod shape-determining protein MreC. (289 aa)    
Predicted Functional Partners:
EIO_0800
Cell shape determining protein, MreB/Mrl family.
 
 
 0.981
mreB
Rod shape-determining protein MreB.
 
 
 0.962
mreD
Rod shape-determining protein MreD.
 
  
 0.883
EIO_0797
Membrane protein, putative.
 
     0.875
radC
DNA repair protein RadC.
  
  
 0.853
EIO_0397
Stage V sporulation protein D.
 
 
 0.850
EIO_1199
Conserved hypothetical protein.
 
 
 
 0.753
EIO_1772
Conserved hypothetical protein.
 
     0.717
EIO_0871
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.
  
   
 0.690
EIO_0380
Cell division protein FtsZ.
  
  
 0.594
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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