Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mreBRod shape-determining protein MreB. (156 aa)    
Predicted Functional Partners:
EIO_0800
Cell shape determining protein, MreB/Mrl family.
     0.994
mreC
Rod shape-determining protein MreC.
 
 
 0.962
EIO_1199
Conserved hypothetical protein.
  
 
 0.827
mreD
Rod shape-determining protein MreD.
 
 
 0.817
EIO_0934
Ribose-phosphate pyrophosphokinase.
   
    0.562
EIO_0797
Membrane protein, putative.
       0.561
pheT
phenylalanyl-tRNA synthetase, beta subunit.
  
 
 0.540
EIO_0373
Cell division protein FtsW.
 
 
 0.533
tig
Trigger factor.
  
   0.527
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
 
  
 0.495
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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