Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpoHAlternative sigma factor RpoH. (298 aa)    
Predicted Functional Partners:
EIO_2572
DNA-directed RNA polymerase alpha subunit.
 
 0.980
rpoZ
DNA-directed RNA polymerase omega subunit.
 
 
 0.974
rpoB
DNA-directed RNA polymerase, beta subunit.
 
 0.974
rpoC
DNA-directed RNA polymerase, beta' subunit.
 
 0.936
rpoD
RNA polymerase sigma factor.
  
  
0.878
EIO_2840
Chaperone protein DnaJ.
  
 
 0.873
EIO_2841
Chaperone protein DnaK.
  
 
 0.862
lepA
GTP-binding protein LepA.
  
 
 0.822
EIO_0822
Transcriptional regulator, CarD family protein.
   
 
 0.816
fnrL
Transcriptional activator protein FnrL.
    
 
 0.796
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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