Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0818Tetratricopeptide TPR_2 repeat protein. (169 aa)    
Predicted Functional Partners:
EIO_0692
RNA polymerase, sigma 32 subunit, RpoH.
  
 0.970
EIO_0707
Conserved hypothetical protein.
  
 0.961
EIO_2841
Chaperone protein DnaK.
  
 0.960
alaS
alanyl-tRNA synthetase.
   
 0.950
EIO_1743
Chaperone protein DnaJ, putative.
    
 0.928
EIO_2840
Chaperone protein DnaJ.
    
 0.928
EIO_2572
DNA-directed RNA polymerase alpha subunit.
  
 0.842
EIO_0520
Gluconate 2-dehydrogenase (acceptor).
    
 0.834
EIO_1937
Oxidoreductase protein.
    
 0.834
rpoB
DNA-directed RNA polymerase, beta subunit.
  
 0.832
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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