Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0822Transcriptional regulator, CarD family protein. (169 aa)    
Predicted Functional Partners:
EIO_2572
DNA-directed RNA polymerase alpha subunit.
  
 
 
 0.878
rpoC
DNA-directed RNA polymerase, beta' subunit.
    
 
 0.876
rpoB
DNA-directed RNA polymerase, beta subunit.
    
 
 0.873
rpoZ
DNA-directed RNA polymerase omega subunit.
   
 
 0.871
rpoH
Alternative sigma factor RpoH.
   
 
 0.816
rpoD
RNA polymerase sigma factor.
 
 
 
 0.806
EIO_0692
RNA polymerase, sigma 32 subunit, RpoH.
   
 
 0.781
EIO_0821
Iron-sulfur cluster-binding protein.
       0.667
EIO_1299
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/ 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
  
  
 0.644
EIO_0819
Helicase, putative.
 
     0.635
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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