Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0827Possible serine protease. (473 aa)    
Predicted Functional Partners:
EIO_0692
RNA polymerase, sigma 32 subunit, RpoH.
  
 0.948
EIO_0603
Signal peptidase I.
  
 
 0.829
rpsF
30S ribosomal protein S6.
  
 
 0.782
rplD
50S ribosomal protein L4.
   
 
 0.755
rplK
Ribosomal protein L11.
    
   0.753
rpsI
30S ribosomal protein S9.
  
   0.752
rpsM
Ribosomal protein S13p/S18e.
   
   0.748
rpsH
Ribosomal protein S8.
  
 
   0.746
rpsE
30S ribosomal protein S5.
   
   0.721
hflC
HflC protein.
 
 
 0.689
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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