Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EIO_0843Cytochrome c family protein. (136 aa)    
Predicted Functional Partners:
petA
Ubiquinol-cytochrome c reductase, iron-sulfur subunit.
  
 
 0.945
EIO_0772
Cytochrome c oxidase, subunit III.
  
 
 0.918
EIO_2828
Ubiquinol--cytochrome c reductase, cytochrome B.
  
 
 0.805
fbcB
Cytochrome b.
  
 
 0.805
EIO_2830
Ubiquinol--cytochrome c reductase, cytochrome c1.
  
 
 0.787
EIO_0842
Thymidine kinase.
       0.773
EIO_0348
Putative transmembrane cytochrome D ubiquinol oxidase subunit I.
    
 0.763
EIO_0347
Cytochrome d oxidase subunit II.
     
 0.756
EIO_2274
NADH dehydrogenase subunit I.
  
 
 0.754
lolD
ABC lipoprotein efflux transporter, ATPase subunit, LolD.
  
    0.753
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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