STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lolDABC lipoprotein efflux transporter, ATPase subunit, LolD. (229 aa)    
Predicted Functional Partners:
lolE
Lipoprotein releasing system transmembrane protein LolE.
 0.999
EIO_1127
Daunorubicin resistance ABC transporter ATPase subunit.
 
0.882
EIO_2789
Twin-arginine translocation pathway signal.
   
 
 0.828
EIO_0248
Polar amino acid ABC transporter, inner membrane subunit.
 
 
 
 0.822
EIO_0842
Thymidine kinase.
       0.755
EIO_0843
Cytochrome c family protein.
  
    0.753
proS
prolyl-tRNA synthetase.
       0.734
EIO_1020
Putative ABC transporter, inner membrane subunit.
   
 
 0.712
EIO_2688
ABC transporter, ATP-binding protein.
 
  
 
0.661
EIO_0279
Putative ATP-binding component of ABC transporter.
 
  
 
0.656
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.