Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
proSprolyl-tRNA synthetase. (445 aa)    
Predicted Functional Partners:
ileS
isoleucyl-tRNA synthetase.
   
 0.993
EIO_2263
arginyl-tRNA synthetase.
  
 0.989
leuS
leucyl-tRNA synthetase.
 
 0.983
metG
methionyl-tRNA synthetase.
  
 0.980
pheT
phenylalanyl-tRNA synthetase, beta subunit.
  
 0.945
EIO_0867
glutamyl-tRNA synthetase.
  
 0.919
EIO_2098
glutamyl-tRNA synthetase.
  
 0.919
EIO_1550
glutamyl-tRNA synthetase, class Ic.
  
 0.913
EIO_1568
Undecaprenyl diphosphate synthase.
  
  
 0.876
guaA
GMP synthase.
  
  
 0.857
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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