Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EIO_0853tryptophanyl-tRNA synthetase. (344 aa)    
Predicted Functional Partners:
EIO_2175
Esterase YbfF.
      0.897
pheT
phenylalanyl-tRNA synthetase, beta subunit.
  
  
 0.752
EIO_0854
Rhomboid family protein.
       0.718
EIO_1366
seryl-tRNA synthetase.
  
 
 0.695
guaA
GMP synthase.
  
  
 0.650
EIO_2263
arginyl-tRNA synthetase.
  
  
 0.641
leuS
leucyl-tRNA synthetase.
  
 
 0.620
ileS
isoleucyl-tRNA synthetase.
  
 
 0.613
EIO_2092
tyrosyl-tRNA synthetase.
 
  
 0.610
EIO_0852
Conserved hypothetical protein.
       0.599
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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