STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0867glutamyl-tRNA synthetase. (442 aa)    
Predicted Functional Partners:
rplM
Ribosomal protein L13.
  
 0.972
rplW
Ribosomal protein L23.
   
 0.972
rplF
50S ribosomal protein L6.
   
 0.962
rplR
50S ribosomal protein L18.
   
 0.961
rplV
Ribosomal protein L22.
   
 0.957
rplO
Ribosomal protein L15.
   
 0.956
rplX
Ribosomal protein L24.
   
 0.955
rpsN
Ribosomal protein S14.
   
 0.954
leuS
leucyl-tRNA synthetase.
  
 0.952
EIO_2584
Ribosomal protein L5.
   
 0.951
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.