STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0871D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase. (489 aa)    
Predicted Functional Partners:
nadD
Nicotinic acid mononucleotide adenylyltransferase.
       0.845
EIO_0692
RNA polymerase, sigma 32 subunit, RpoH.
   
 
 0.797
EIO_2217
Conserved hypothetical protein.
  
     0.697
mreC
Rod shape-determining protein MreC.
  
   
 0.684
EIO_1772
Conserved hypothetical protein.
  
     0.674
EIO_0551
ATPase.
  
     0.623
EIO_0570
Conserved hypothetical protein.
  
     0.617
EIO_0990
Conserved hypothetical protein.
  
     0.543
EIO_0575
Conserved hypothetical protein.
  
     0.539
EIO_0904
D-alanyl-D-alanine carboxypeptidase family.
  
   
 0.539
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.