Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ureCUrease, alpha subunit. (594 aa)    
Predicted Functional Partners:
ureA
Urease, gamma subunit.
 0.999
ureB
Urease, beta subunit.
 0.999
ureG
Urease accessory protein UreG.
  
 0.993
ureD
Urease accessory protein UreD.
 
 
 0.986
ureE
Urease accessory protein UreE.
 
  
 0.958
EIO_0974
Ureidoglycolate hydrolase.
    
  0.901
EIO_0881
2-dehydro-3-deoxygalactonokinase.
       0.773
EIO_0882
Transcriptional regulator.
       0.773
EIO_0874
Conserved hypothetical protein.
       0.548
EIO_0883
Putative ring-cleavage extradiol dioxygenase.
       0.514
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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