Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
EIO_0885Aminotransferase. (455 aa)    
Predicted Functional Partners:
ald
Aldehyde dehydrogenase family protein, putative.
    
 0.804
EIO_2382
Aldehyde dehydrogenase.
    
 0.804
EIO_0979
Taurine--pyruvate aminotransferase.
  
     0.603
EIO_1643
ABC polyamine transporter, periplasmic substrate-binding protein.
 
    0.572
EIO_1198
5-aminolevulinate synthase.
  
  
 0.541
EIO_0886
UDP-glucose 4-epimerase.
       0.523
EIO_0752
Glutamine synthetase family protein.
  
 0.445
EIO_0647
Riboflavin biosynthesis protein RibD.
     
 0.437
nadE
Glutamine-dependent NAD(+) synthetase.
   
 
 0.419
ordL
Oxidoreductase ordL.
 
  
 0.417
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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