Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dnaXDNA polymerase III, subunits gamma and tau. (583 aa)    
Predicted Functional Partners:
EIO_2448
DNA polymerase III subunit delta.
 
 
0.998
EIO_2816
Conserved hypothetical protein.
 
 
 0.998
EIO_1676
DNA polymerase III subunit chi.
    
 0.996
EIO_2032
DNA polymerase III subunit beta.
   
 0.996
EIO_2386
DNA polymerase III, beta subunit.
   
 0.996
dnaE
DNA polymerase III subunit alpha.
 
 0.994
EIO_1766
Exonuclease.
   
 0.991
EIO_2758
DNA polymerase III, epsilon subunit.
   
 0.991
recR
Recombination protein RecR.
  
 0.941
dnaB
Replicative DNA helicase.
 
 0.941
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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