Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EIO_0901Oligopeptide/dipeptide uptake family ABC transporter, permease protein. (368 aa)    
Predicted Functional Partners:
EIO_0900
ABC peptide transporter, inner membrane subunit.
 
 
 0.976
EIO_0903
ABC peptide transporter, fused ATPase domains.
  
  0.947
yejA
Oligopeptide/dipeptide uptake family ABC transporter, periplasmic substrate-binding protein.
 
 
 0.924
EIO_0902
Nickel import ATP-binding protein NikD, putative.
 
 
 0.922
EIO_1413
ABC transporter, periplasmic substrate-binding protein, putative.
 
 
 0.870
EIO_2472
ABC transporter related protein.
 
 0.811
EIO_0898
Cytochrome c, class I.
       0.581
EIO_1947
Putative oligopeptide ABC transporter, ATP-binding protein.
  
  0.500
EIO_0897
Prephenate dehydratase.
       0.422
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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