Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0902Nickel import ATP-binding protein NikD, putative. (132 aa)    
Predicted Functional Partners:
EIO_0903
ABC peptide transporter, fused ATPase domains.
  
 
0.982
EIO_0292
ABC transporter ATP-binding component.
  
  0.973
EIO_0900
ABC peptide transporter, inner membrane subunit.
 
 
 0.958
EIO_0737
Peptide ABC transporter.
 
  
 
0.932
EIO_0785
Oligopeptide ABC transporter ATP-binding protein.
  
 
0.931
EIO_1482
Oligopeptide ABC transporter ATP binding protein.
  
 
0.931
EIO_1973
Oligopeptide/dipeptide ABC transporter, ATPase subunit.
 
 
0.931
EIO_1447
Oligopeptide/dipeptide ABC transporter ATP-binding protein.
  
 
0.930
EIO_1795
Oligopeptide/dipeptide ABC transporter, ATPase subunit.
 
 
0.930
EIO_1500
ABC transporter, nucleotide binding/ATPase protein (oligopeptide).
  
 
0.929
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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