STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0902Nickel import ATP-binding protein NikD, putative. (132 aa)    
Predicted Functional Partners:
EIO_0903
ABC peptide transporter, fused ATPase domains.
  
 
0.987
EIO_0292
ABC transporter ATP-binding component.
  
  0.972
EIO_0901
Oligopeptide/dipeptide uptake family ABC transporter, permease protein.
 
 0.970
EIO_0900
ABC peptide transporter, inner membrane subunit.
 
 
 0.959
EIO_1973
Oligopeptide/dipeptide ABC transporter, ATPase subunit.
 
 
0.952
EIO_1795
Oligopeptide/dipeptide ABC transporter, ATPase subunit.
 
 
0.951
EIO_0280
ABC transporter related protein.
 
 
0.949
EIO_0737
Peptide ABC transporter.
  
 
0.949
EIO_1052
ABC transporter related protein.
 
  
 
0.931
EIO_1501
ABC transporter, ATP-binding protein.
 
 
0.931
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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