Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0906Probable penicillin-binding protein. (314 aa)    
Predicted Functional Partners:
EIO_0904
D-alanyl-D-alanine carboxypeptidase family.
      0.976
EIO_0905
Hypothetical protein.
       0.773
EIO_0907
Predicted hydrolase (haloacid dehalogenase (HAD) superfamily protein).
       0.636
tig
Trigger factor.
  
    0.587
leuS
leucyl-tRNA synthetase.
 
  
 0.554
rsmC
Ribosomal RNA small subunit methyltransferase C RsmC.
  
    0.475
EIO_0908
ATP-dependent Clp protease adaptor protein clpS.
       0.473
EIO_0397
Stage V sporulation protein D.
 
  
 0.438
mreD
Rod shape-determining protein MreD.
 
  
 0.412
EIO_2759
Preprotein translocase subunit SecB.
  
    0.410
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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