STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmCRibosomal RNA small subunit methyltransferase C RsmC. (332 aa)    
Predicted Functional Partners:
EIO_0908
ATP-dependent Clp protease adaptor protein clpS.
       0.845
EIO_0907
Predicted hydrolase (haloacid dehalogenase (HAD) superfamily protein).
       0.716
EIO_0421
GTP-binding protein, GTP1/OBG family.
   
  
 0.648
EIO_0378
Cell division protein FtsQ.
  
     0.627
nusG
Transcription termination/antitermination factor NusG.
  
  
 0.503
EIO_2678
HemY domain protein.
  
     0.496
rplA
50S ribosomal protein L1.
  
    0.486
rplL
Ribosomal protein L7/L12.
  
  
 0.484
EIO_0572
Lipoprotein, putative.
  
     0.483
rpoB
DNA-directed RNA polymerase, beta subunit.
  
    0.482
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.