STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemEUroporphyrinogen decarboxylase. (344 aa)    
Predicted Functional Partners:
hemC
Porphobilinogen deaminase.
 
 0.998
EIO_0541
Protoporphyrinogen oxidase.
 
 0.996
hemF
Coproporphyrinogen III oxidase.
 
 0.982
hemH
Ferrochelatase.
 
  
 0.980
EIO_0467
Coproporphyrinogen III oxidase.
 
 
 0.970
EIO_2680
uroporphyrinogen-III synthase, putative.
  
 
 0.940
EIO_1068
Delta-aminolevulinic acid dehydratase.
 
 
 0.840
EIO_2430
Glutamine-pyruvate aminotransferase.
     
 0.791
metH
Probable 5-methyltetrahydrofolate--homocysteine methyltransferase.
  
  
 0.704
rho
Transcription termination factor Rho.
    
 0.693
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.