Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0915Cyclohexadienyl dehydrogenase. (311 aa)    
Predicted Functional Partners:
hisC
Histidinol-phosphate aminotransferase.
 
 
 0.997
EIO_0897
Prephenate dehydratase.
 
 0.982
EIO_2209
Histidinol-phosphate aminotransferase.
 
 
 0.981
EIO_0544
3-phosphoshikimate 1-carboxyvinyltransferase protein.
 
  
 0.977
EIO_0086
Chorismate mutase.
 
 
 0.957
amt-2
Aromatic amino acid aminotransferase.
    
 0.920
EIO_1187
Aspartate aminotransferase.
  
 
 0.908
EIO_1890
Aspartate aminotransferase.
  
 
 0.908
EIO_1016
Cytidylate kinase.
 
  
 0.891
EIO_2835
Chorismate synthase.
  
  
 0.852
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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