Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0929ATP synthase subunit A. (513 aa)    
Predicted Functional Partners:
atpB
ATP synthase F0, A subunit.
 
 0.999
EIO_0094
ATP synthase subunit C.
  
 0.999
EIO_0095
ATP synthase F0, B' subunit.
  
 0.999
atpF
ATP synthase F0, B subunit.
  
 0.999
EIO_0928
ATP synthase F1, delta subunit.
 
 0.999
atpG
F0F1 ATP synthase subunit gamma.
 0.999
atpD
ATP synthase F1, beta subunit.
 
0.999
atpC
ATP synthase F1, epsilon subunit.
 
 0.999
pdhB
Pyruvate dehydrogenase subunit beta.
  
 0.971
nuoD
NADH dehydrogenase I, D subunit.
 
 
 0.971
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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