Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ribFRiboflavin biosynthesis protein RibF. (312 aa)    
Predicted Functional Partners:
truB
tRNA pseudouridine synthase B.
  
 0.965
ribE-2
Riboflavin synthase subunit alpha.
    
 0.934
EIO_0935
Threonine aldolase, low-specificity.
     
 0.876
EIO_0936
Conserved hypothetical protein.
       0.854
EIO_1016
Cytidylate kinase.
  
 0.834
coaD
Phosphopantetheine adenylyltransferase.
 
   
 0.735
EIO_0647
Riboflavin biosynthesis protein RibD.
 
  
 0.729
EIO_0934
Ribose-phosphate pyrophosphokinase.
 
 
 0.701
EIO_0938
Conserved hypothetical protein.
       0.701
ileS
isoleucyl-tRNA synthetase.
 
    0.686
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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