Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0951Conserved domain protein. (76 aa)    
Predicted Functional Partners:
EIO_0950
Heat shock protein, Hsp20 family protein.
  
    0.857
EIO_1408
ATP-dependent protease La.
    
   0.803
EIO_0854
Rhomboid family protein.
  
     0.771
sdhD
Succinate dehydrogenase, hydrophobic membrane anchor protein.
  
     0.768
EIO_0904
D-alanyl-D-alanine carboxypeptidase family.
  
     0.756
EIO_0575
Conserved hypothetical protein.
  
     0.743
EIO_2217
Conserved hypothetical protein.
  
     0.742
EIO_0990
Conserved hypothetical protein.
  
     0.737
EIO_1093
Periplasmic sensor signal transduction histidine kinase.
  
     0.729
EIO_2811
Conserved hypothetical protein.
  
     0.726
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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