Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0956Conserved hypothetical protein. (351 aa)    
Predicted Functional Partners:
EIO_0955
Conserved hypothetical protein.
      0.880
EIO_2274
NADH dehydrogenase subunit I.
 
  
 0.840
lgt
Prolipoprotein diacylglyceryl transferase.
 
     0.816
nuoD
NADH dehydrogenase I, D subunit.
 
 
 0.752
EIO_2434
3-beta hydroxysteroid dehydrogenase/isomerase.
  
  
  0.749
EIO_2727
Methyltransferase.
  
     0.743
EIO_2283
NADH dehydrogenase subunit C.
 
 
 0.710
EIO_2284
NADH-quinone oxidoreductase, B subunit.
 
 
 0.702
EIO_2276
NADH dehydrogenase (quinone), g subunit.
 
 
  0.689
EIO_0958
Conserved hypothetical protein.
       0.634
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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