Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0958Conserved hypothetical protein. (83 aa)    
Predicted Functional Partners:
lgt
Prolipoprotein diacylglyceryl transferase.
 
     0.746
EIO_0956
Conserved hypothetical protein.
       0.634
EIO_0955
Conserved hypothetical protein.
       0.613
EIO_2291
Conserved hypothetical protein.
     
 0.609
EIO_0959
Ferric uptake regulator family protein.
  
    0.595
EIO_0960
ABC transporter, ATP-binding protein.
       0.592
EIO_0961
ABC transporter, permease protein.
       0.592
EIO_2041
Conserved hypothetical protein.
  
     0.542
cobT
Cobalamin biosynthesis protein CobT.
  
     0.522
EIO_2727
Methyltransferase.
  
  
  0.499
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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