Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0962Periplasmic solute binding protein. (283 aa)    
Predicted Functional Partners:
EIO_0961
ABC transporter, permease protein.
 
 0.987
EIO_0960
ABC transporter, ATP-binding protein.
 
  
 0.966
EIO_2654
ABC Mn+2/Fe+2 transporter, inner membrane subunit SitD.
 
 0.914
EIO_2655
ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC.
 
 0.866
EIO_0963
Polyisoprenyl-phosphate glycosyltransferase; Probable dolichol-phosphate mannosyltransferase-putative membrane bound sugar transferase involved in LPS biosynthesis.
       0.773
EIO_1019
ABC transporter, ATPase subunit.
    
 0.744
EIO_0959
Ferric uptake regulator family protein.
 
  
 0.716
sitB
ABC Mn+2/Fe+2 transporter, ATPase subunit SitB.
 
  
 0.716
rpsN
Ribosomal protein S14.
  
  
 0.469
EIO_0958
Conserved hypothetical protein.
       0.456
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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