Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0970D-ribose transport system permease protein. (323 aa)    
Predicted Functional Partners:
EIO_0460
ABC transporter, substrate binding protein (sugar).
 0.998
EIO_0971
ABC transporter related protein.
 0.997
EIO_0972
ABC sugar (ribose) transporter, periplasmic substrate-binding subunit.
 
 0.993
EIO_0459
ABC transporter, nucleotide binding/ATPase protein (sugar).
 0.990
EIO_0457
ABC transporter, membrane spanning protein (ribose).
 
  
 
0.980
EIO_0458
ABC transporter, membrane spanning protein (sugar).
  
  
 
0.928
mglA3
ABC-type sugar transport system.
 
     0.668
fggY
Carbohydrate kinase FGGY.
 
  
 0.663
EIO_2688
ABC transporter, ATP-binding protein.
     
  0.658
EIO_0522
Transcriptional regulator, LacI family.
  
 0.648
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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