Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_1005GatB/YqeY. (152 aa)    
Predicted Functional Partners:
rpsU
30S ribosomal protein S21.
  
  
 0.920
EIO_1006
Luciferase-like monooxygenase superfamily.
       0.773
carA
Carbamoyl-phosphate synthase, small subunit.
       0.724
rpsO
Ribosomal protein S15.
  
    0.619
EIO_1003
GSPII_E N-terminal domain family.
       0.559
EIO_0081
Ribosomal protein L31.
   
    0.467
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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