Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EIO_1018MerR family transcriptional regulator. (143 aa)    
Predicted Functional Partners:
EIO_1017
Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase.
 
  
 0.822
EIO_1019
ABC transporter, ATPase subunit.
       0.773
dnaX
DNA polymerase III, subunits gamma and tau.
   
  0.669
EIO_2816
Conserved hypothetical protein.
    
  0.609
EIO_1020
Putative ABC transporter, inner membrane subunit.
       0.601
EIO_1021
BioY protein.
       0.593
EIO_2430
Glutamine-pyruvate aminotransferase.
     
 0.450
rpoB
DNA-directed RNA polymerase, beta subunit.
    
 
 0.414
EIO_1653
Phospholipase/carboxylesterase family protein.
      
 0.407
EIO_1655
DNA-3-methyladenine glycosylase II, putative.
      
 0.407
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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