Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_1029RNA polymerase sigma-70 factor. (119 aa)    
Predicted Functional Partners:
EIO_1030
RNA polymerase sigma-70 factor.
     0.990
EIO_1032
Conserved hypothetical protein.
 
    0.889
EIO_1031
Hypothetical protein.
       0.773
EIO_1027
Calmodulin-like protein 2.
 
     0.750
rpoZ
DNA-directed RNA polymerase omega subunit.
    
 0.694
rpoC
DNA-directed RNA polymerase, beta' subunit.
    
 0.689
rpoB
DNA-directed RNA polymerase, beta subunit.
    
 0.683
EIO_2572
DNA-directed RNA polymerase alpha subunit.
    
 0.629
EIO_1606
Transcriptional activator, putative.
  
 
 0.481
EIO_1026
Conserved hypothetical protein.
       0.475
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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