Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lexALexA repressor. (221 aa)    
Predicted Functional Partners:
recA
Recombinase A.
  
 0.996
dinB
DNA polymerase IV.
  
 0.972
EIO_2806
Modification methylase.
    
 0.938
EIO_0447
Conserved hypothetical protein.
  
 0.890
ruvA
Holliday junction DNA helicase motor protein.
  
 
 0.862
EIO_0384
DNA repair protein RecN.
   
  
 0.851
EIO_1766
Exonuclease.
  
 
 0.790
EIO_2758
DNA polymerase III, epsilon subunit.
  
 
 0.790
trpC
Indole-3-glycerol phosphate synthase.
     
 0.771
moaC
Molybdenum cofactor biosynthesis protein C.
     
 0.770
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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