Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trpDAnthranilate phosphoribosyltransferase. (338 aa)    
Predicted Functional Partners:
trpC
Indole-3-glycerol phosphate synthase.
  
 0.999
trpG
Anthranilate synthase component II.
 
 0.999
trpE
Anthranilate synthase component I.
 0.999
EIO_0726
N-(5'-phosphoribosyl)anthranilate isomerase.
 
 0.998
EIO_0728
Tryptophan synthase subunit beta.
  
 0.990
EIO_0732
Tryptophan synthase, alpha subunit.
  
 0.985
EIO_1101
uracil-DNA glycosylase.
      0.945
moeA
Molybdopterin biosynthesis protein MoeA.
  
  
 0.878
moaC
Molybdenum cofactor biosynthesis protein C.
     
 0.876
lexA
LexA repressor.
     
 0.754
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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