Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
EIO_1107Peptidyl-prolyl cis-trans isomerase D, putative. (612 aa)    
Predicted Functional Partners:
trpE
Anthranilate synthase component I.
     
 0.846
EIO_1564
Putative outer membrane protein.
 
 
 0.830
gpt
Xanthine phosphoribosyltransferase.
 
    0.736
EIO_1108
Aspartate aminotransferase.
  
    0.725
EIO_2135
Tetratricopeptide TPR_2 repeat protein.
 
   0.637
EIO_0383
Tetratricopeptide TPR_2 repeat protein.
  
 
 0.632
EIO_1680
Organic solvent tolerance protein, putative.
 
  
 0.595
EIO_1698
RNA methyltransferase, TrmH family, group 1.
  
     0.563
EIO_1079
Conserved hypothetical protein.
  
 
 0.556
moeA
Molybdopterin biosynthesis protein MoeA.
  
 
 0.538
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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