STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_1111Pyridoxamine 5'-phosphate oxidase. (201 aa)    
Predicted Functional Partners:
pdxJ
Pyridoxal phosphate biosynthetic protein PdxJ.
  
  
 0.942
EIO_1112
'Cold-shock' DNA-binding domain protein.
     
 0.695
EIO_1113
Conserved hypothetical protein.
       0.695
gpt
Xanthine phosphoribosyltransferase.
       0.672
carB
Carbamoyl-phosphate synthase large subunit.
 
 
  
 0.616
EIO_1110
Enoyl-(acyl carrier protein) reductase.
     
 0.601
EIO_1627
Glycine dehydrogenase.
 
   
 0.600
carA
Carbamoyl-phosphate synthase, small subunit.
 
      0.595
pyrB
Aspartate carbamoyltransferase.
      0.568
EIO_1108
Aspartate aminotransferase.
     
 0.565
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.