Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ppiBPeptidyl-prolyl cis-trans isomerase, cyclophilin-type. (185 aa)    
Predicted Functional Partners:
EIO_1173
Peptidyl-prolyl cis-trans isomerase, cyclophilin type.
 
   
0.902
EIO_2598
Elongation factor G.
   
 0.883
EIO_2841
Chaperone protein DnaK.
 
 0.871
EIO_0692
RNA polymerase, sigma 32 subunit, RpoH.
  
 0.869
EIO_2182
Ornithine carbamoyltransferase.
   
 0.857
EIO_0707
Conserved hypothetical protein.
  
 0.819
EIO_0818
Tetratricopeptide TPR_2 repeat protein.
  
 0.748
pgk
Phosphoglycerate kinase.
  
 
 0.730
rhlE
Putative ATP-dependent RNA helicase RhlE.
 
 0.718
ndk
Nucleoside diphosphate kinase.
  
 0.716
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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