Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_1272Conserved hypothetical protein. (337 aa)    
Predicted Functional Partners:
EIO_1271
Hypothetical protein.
       0.762
metH
Probable 5-methyltetrahydrofolate--homocysteine methyltransferase.
     
 0.668
EIO_0647
Riboflavin biosynthesis protein RibD.
   
 
 0.550
EIO_1273
Hypothetical protein.
       0.532
EIO_1639
Putative cysteine synthase A.
  
  
 0.527
nadE
Glutamine-dependent NAD(+) synthetase.
     
 0.519
EIO_1037
O-succinylhomoserine sulfhydrylase.
  
  
 0.487
EIO_2837
AMP nucleosidase.
  
  
 0.487
EIO_2255
Flagellar motor switch protein FliG.
    
 
 0.456
metK
S-adenosylmethionine synthetase.
     
 0.427
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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