Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_1303Two component, sigma54 specific, transcriptional regulator, Fis family protein. (457 aa)    
Predicted Functional Partners:
ntrB
Nitrogen regulation protein NtrB.
 0.998
EIO_1301
tRNA-dihydrouridine synthase, putative.
 
  
 0.823
EIO_1304
Nitrogen regulation protein NtrY.
 
 0.771
EIO_1300
Hypothetical protein.
       0.762
ntrX
Nitrogen assimilation regulatory protein NtrX.
 
    
0.675
EIO_1299
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/ 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
       0.647
EIO_0367
Possible flagellar switch protein FliM.
 
  
 0.638
EIO_1298
Phosphatidylglycerophosphatase, putative.
 
     0.638
EIO_1297
Competence/damage-inducible protein CinA domain protein.
       0.580
EIO_1094
C4-dicarboxylate transport sensor protein DctB, putative.
  
     0.531
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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