Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_1340Conserved hypothetical protein. (397 aa)    
Predicted Functional Partners:
EIO_0132
Conserved hypothetical protein.
  
     0.561
EIO_1341
Hypothetical protein.
       0.513
EIO_2091
Conserved hypothetical protein.
  
     0.483
EIO_0288
Sulfite reductase.
  
     0.448
EIO_0225
Glycosyl transferase family 2.
 
     0.440
EIO_1339
Conserved hypothetical protein.
       0.433
mdoG
Glucan biosynthesis protein G.
 
     0.406
hasR
Heme receptor.
  
     0.400
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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