Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
secDProtein-export membrane protein SecD. (554 aa)    
Predicted Functional Partners:
EIO_1370
Protein-export membrane protein secF.
 0.999
secF
Preprotein translocase subunit SecF.
0.999
oxaA
Inner membrane protein oxaA, putative.
  
 0.985
yajC
Preprotein translocase, YajC subunit.
 
 
 0.984
secY
Preprotein translocase SecY.
  
 0.981
secE
Preprotein translocase, SecE subunit.
  
 0.965
EIO_2706
Translocase.
 
 
 0.919
EIO_0761
Putative preprotein translocase.
   
 0.857
ccmA
ABC heme exporter, ATPase subunt CcmA.
       0.854
ccmB
Heme exporter protein CcmB.
       0.854
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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