Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_1391Holdfast attachment protein C. (603 aa)    
Predicted Functional Partners:
EIO_0418
50S ribosomal protein L21.
  
   0.775
rpsC
30S ribosomal protein S3.
   
   0.771
rplD
50S ribosomal protein L4.
   
 
 0.771
EIO_0206
50S ribosomal protein L20.
  
 
 0.767
rpsO
Ribosomal protein S15.
   
   0.766
rpmD
Ribosomal protein L30.
   
   0.765
EIO_2599
30S ribosomal protein S7.
  
 
 0.763
EIO_2547
Ribosomal protein L34.
   
   0.762
EIO_2594
50S ribosomal protein L3.
   
 
 0.761
rpsD
Ribosomal protein S4.
  
   0.759
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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