Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_1401Translation initiation factor 3. (136 aa)    
Predicted Functional Partners:
EIO_0206
50S ribosomal protein L20.
  
 0.996
rpsM
Ribosomal protein S13p/S18e.
  
 
 0.990
EIO_2595
30S ribosomal protein S10.
   
 
 0.990
rpsB
30S ribosomal protein S2.
 
 
 0.989
rpsC
30S ribosomal protein S3.
  
 
 0.988
EIO_2599
30S ribosomal protein S7.
   
 
 0.988
rpsK
30S ribosomal protein S11.
   
 
 0.987
EIO_2600
30S ribosomal protein S12.
   
 
 0.987
rpsH
Ribosomal protein S8.
  
 
 0.986
rpsF
30S ribosomal protein S6.
  
 
 0.984
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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