Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EIO_1407Probable queuine tRNA ribosyltransferase. (376 aa)    
Predicted Functional Partners:
EIO_0412
S-adenosylmethionine:tRNA ribosyltransferase-isomerase.
  
 0.990
queA
S-adenosylmethionine/tRNA-ribosyltransferase- isomerase.
 
  
 0.948
EIO_1406
FeS assembly SUF system protein.
       0.678
EIO_1405
HesB/YadR/YfhF.
       0.629
EIO_1550
glutamyl-tRNA synthetase, class Ic.
 
  
 0.601
mreC
Rod shape-determining protein MreC.
  
  
 0.578
EIO_1408
ATP-dependent protease La.
  
    0.558
truB
tRNA pseudouridine synthase B.
  
  
 0.557
EIO_2056
4Fe-4S ferredoxin, iron-sulfur cluster binding protein.
 
  
 0.533
yajC
Preprotein translocase, YajC subunit.
  
  
 0.512
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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